Metabolism, Cell Respiration and Photosynthesis (AHL) - Cell respiration

Cell respiration is the controlled release of energy from organic compounds to produce $ATP$. It involves metabolic pathways including glycolysis, the link reaction, the Krebs cycle, and oxidative phosphorylation.

Glycolysis occurs in the cytosol and is anaerobic. It involves the phosphorylation of glucose, lysis into triose phosphate, and oxidation to produce $2$ molecules of pyruvate, with a net yield of $2 ext{ ATP}$ and $2 ext{ NADH} + H^+$.

In the Link Reaction, pyruvate is transported into the mitochondrial matrix, where it undergoes decarboxylation and oxidation to form an acetyl group, which binds to Coenzyme A to form $Acetyl ext{-}CoA$.

The Krebs Cycle occurs in the matrix. Each turn processes one $Acetyl ext{-}CoA$, releasing $2 ext{ CO}_2$ and generating $3 ext{ NADH} + H^+$, $1 ext{ FADH}_2$, and $1 ext{ ATP}$ via substrate-level phosphorylation.

The Electron Transport Chain (ETC) is located on the inner mitochondrial membrane (cristae). High-energy electrons from $NADH$ and $FADH_2$ are passed through carriers, releasing energy used to pump protons ($H^+$) into the intermembrane space.

Chemiosmosis is the diffusion of protons down their electrochemical gradient from the intermembrane space back into the matrix through $ATP$ synthase, which catalyzes the synthesis of $ATP$.

Oxygen ($O_2$) is the final electron acceptor in the $ETC$. It combines with electrons and $H^+$ ions to form water ($H_2O$), maintaining the proton gradient by removing de-energized electrons.

Mitochondrial structure is adapted to function: the cristae provide a large surface area for the $ETC$, and the small intermembrane space allows for rapid accumulation of protons to create a concentration gradient.